Hi,
Does anyone know if there is any tool out there that can help you mark TFBS on a DNA sequence of ~500-100bp. I have a set of DNA sequences (ChIP-Seq peaks), that were analyzed for TFBS. So now I have a list of TFBS with their location relative to each DNA sequence and the sequence recognized by it.
I need a way that I can visualize these TFBS on a set of DNA sequences (10-12).
It can be done manually by just going through the list and marking up the TFBS sites, but I bet there is something out there that will help you do this.
I am even looking into plasmid draw programs, but couldn't find anything that will help you import a list of annotation features (TFBS with locations) and then mark them up on the sequence.
Any help will be much appreciated, before I dive into writing a program to do this
Thank you!
Does anyone know if there is any tool out there that can help you mark TFBS on a DNA sequence of ~500-100bp. I have a set of DNA sequences (ChIP-Seq peaks), that were analyzed for TFBS. So now I have a list of TFBS with their location relative to each DNA sequence and the sequence recognized by it.
I need a way that I can visualize these TFBS on a set of DNA sequences (10-12).
It can be done manually by just going through the list and marking up the TFBS sites, but I bet there is something out there that will help you do this.
I am even looking into plasmid draw programs, but couldn't find anything that will help you import a list of annotation features (TFBS with locations) and then mark them up on the sequence.
Any help will be much appreciated, before I dive into writing a program to do this
Thank you!