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  • DNAPlotter input file format

    I downloaded and installed DNAplotter. According to their instructions, it accepts a variety of file format types including GFF3.

    I have a GFF3 as following:

    =========
    ##gff-version 3
    ##sequence-region Scaffold122 1 3799748
    # Gene gene:L3E_00178
    Scaffold122 SNAP gene 1272634 1272964 . - . ID=gene:L3E_00178;Name=L3E_00178;Note=Hypothetical protein;public_name=L3E_00178
    Scaffold122 SNAP mRNA 1272634 1272964 . - . ID=transcript:L3E_00178;Parent=gene:L3E_00178;Name=L3E_00178;info=position:1272634-1272964 method=Hypothetical protein
    Scaffold122 SNAP exon 1272634 1272814 18.993 - . ID=exon:L3E_00178.1;Parent=transcript:L3E_00178
    Scaffold122 SNAP exon 1272888 1272964 13.225 - . ID=exon:L3E_00178.2;Parent=transcript:L3E_00178
    Scaffold122 SNAP CDS 1272634 1272814 . - 2 ID=cds:L3E_00178;Parent=transcript:L3E_00178
    Scaffold122 SNAP CDS 1272888 1272964 . - 0 ID=cds:L3E_00178;Parent=transcript:L3E_00178
    ===========

    I launch DNAplotter: java -jar DNAPlotter.jar

    and tried to visualize this gff3 file

    however, got the error messages:
    while reading from dnaplotter.gff3: gene can't have public_name as a qualifier
    while reading from dnaplotter.gff3: mRNA can't have info as a qualifier

    Could anybody give some DNAplotter input examples so that I can format my file accordingly?

    Thanks a lot for the help.

    Capricy

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