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  • GI number to Gene Ontology (GO) function

    Hi,

    I have some troubles and I'm looking for helps.
    I have a list full of GI number and I'm looking to fetch GO function from it.

    I've tested the program 'gene2go' from ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/README but the result is that none of my GI number match to the list inside the program.

    Someone has solutions please ?

    Thanks

  • #2
    It would be easier to make suggestions if you would provide a brief example of your input and desired output.
    Depending on the organism you are working with, there may also be tools available with which you can do eg enrichment analysis only based on GI's (eg GOrilla - http://cbl-gorilla.cs.technion.ac.il/ or agriGO - http://bioinfo.cau.edu.cn/agriGO/)

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    • #3
      Gene enrichment analysis for Human - with list of GeneID (Entrez) and Gene Symbols.

      I could not understand what you mean by GI (as I understand you are talking about Entrez GeneID's). If you have list of Gene ID's or Gene Symbols. I have written a simple perl script to find enriched terms from your list of provided genes. The GO terms are updated till 2014 January. You can download the tool from the following link:

      https://github.com/santhilalsubhash/geneSCF.git

      Please feel free to contact me. If you need further clarification.
      Last edited by santhilalsubhash; 08-05-2014, 07:17 AM. Reason: updated link

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