Hi Folks,
Does anyone know the samtools command to extract a consensus sequence in FASTA format from a BAM file? Not the reference sequence (with faidx) but the consensus of the reads in a region.
Thanks for any help you can supply.
Cheers,
Joe White
Does anyone know the samtools command to extract a consensus sequence in FASTA format from a BAM file? Not the reference sequence (with faidx) but the consensus of the reads in a region.
Thanks for any help you can supply.
Cheers,
Joe White
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