Hi,
Is it possible to have the same alignment for identical reads with bowtie 2 or should bowtie 1 be used? That is there are some genomic positions that should have the same number of mapped reads but they output different number of reads. Does it come from the alignment randomness and how to switch it off?
Thanks
Carol
Is it possible to have the same alignment for identical reads with bowtie 2 or should bowtie 1 be used? That is there are some genomic positions that should have the same number of mapped reads but they output different number of reads. Does it come from the alignment randomness and how to switch it off?
Thanks
Carol
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