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  • lethalfang
    Member
    • Aug 2011
    • 95

    #1

    How to parse the bases string in pileup file

    Does anyone know of a simple way to parse the base string of a pileup file into each call?
    I want to parse it using the regex of Python, but I find a bit challenging to parse things like,
    Code:
    [B]+2GC[/B]TAGCTA
    The problem is how to extract the "2", and then specify to grab the next "2" bases as a call.

    If anyone has a way, I appreciate it.

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