Hi,
I want to quantify exon inclusion/skipping rates across a number of different conditions. So for each condition, I obtained FPKM values for each exon, and also FPKMs for each gene locus encompassing all the eons. Does it make sense if I use the ratio of EXON-FPKM/Gene-FPKM in each condition to quantify the exon usage in the condition?
Thank you
I want to quantify exon inclusion/skipping rates across a number of different conditions. So for each condition, I obtained FPKM values for each exon, and also FPKMs for each gene locus encompassing all the eons. Does it make sense if I use the ratio of EXON-FPKM/Gene-FPKM in each condition to quantify the exon usage in the condition?
Thank you
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