Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    Anyone know a program to detect duplicated regions?

    Hi All,

    I'm working with on generating denovo mtDNA genomes for many species of an invertebrate taxa of the same genus. These critters have a duplicated non-coding region (~800bp) separated by ~6000bp, the problem is that the non-coding region is different in every species. Since this is not a tandem repeat, and is quite large, the microsatellite finding programs are of no use. Anyone know a program that can find these large duplicated regions?

    Cheers,
    Tags: duplication, mitochondrial genome, mtdna, software
  • #2
    Why do not use Blast? If the query and the database are the same, it will find all the duplicated regions.
    Last edited by TiborNagy; 06-19-2014, 05:54 AM. Reason: misstype

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Non-Coding RNA Research and Technologies
      by seqadmin




      Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.

      Nobel Prize for MicroRNA Discovery
      This week,...
      10-07-2024, 08:07 AM
    • seqadmin
      Recent Developments in Metagenomics
      by seqadmin





      Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable1. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...
      09-23-2024, 06:35 AM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Mechanical Forces in DNA Transcription Uncovered by Clemson Researchers by seqadmin
    Started by seqadmin, 10-02-2024, 04:51 AM
    0 responses
    103 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    10-02-2024, 04:51 AM  
    New Epigenetic Clock Links Cheek Cells to Mortality Risk by seqadmin
    Started by seqadmin, 10-01-2024, 07:10 AM
    0 responses
    111 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    10-01-2024, 07:10 AM  
    AI-Powered Blood Test Shows Promise for Early Ovarian Cancer Detection by seqadmin
    Started by seqadmin, 09-30-2024, 08:33 AM
    1 response
    114 views
    0 likes
    		 Last Post EmiTom
    by EmiTom
    10-07-2024, 06:46 AM  
    Stem Cell Research Suggests Human Cells May Enter Developmental Pause by seqadmin
    Started by seqadmin, 09-26-2024, 12:57 PM
    0 responses
    20 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    09-26-2024, 12:57 PM  
    View All
    Working...
    X