annotation of exon data is incorrect?

[gfrantzen]

Greetings,

I am generating an object and assigning it the value of DEXSeqResults() in a manner not unlike the tutorial/documentation. I then write.table( <the results> ) and it generates a large text file. Here is the problem:

When I examine a location in the txt file that is generated from DEXSeqResults, let's say ENSG00000103707 for example... The provided data is incongruous with what plotDEXSeq(blah, "ENSG00000103707", blah) is displaying.

Btw, I'm using Ensembl gtf 75.

Thanks

[dpryan]

It'd help if you posted an example of that.