Hi,
When I run the following command
$ Trinotate Trinotate.sqlite init --gene_trans_map /home/new/trinity_targets.gene_trans_map --transcript_fasta /home/new/trinity_targets.fasta --transdecoder_pep /home/new1/trinity_targets.fasta.transdecoder.pep
I get the error
CMD: /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/TrinotateSeqLoader.pl --gene_trans_map /home/new/trinity_targets.gene_trans_map --transcript_fasta /home/new/trinity_targets.fasta --transdecoder_pep /home/new1/trinity_targets.fasta.transdecoder.pep --bulk_load
install_driver(SQLite) failed: Can't locate DBD/SQLite.pm in @INC (@INC contains: /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/../../PerlLib /data/apps/amos/lib/AMOS /data/apps/amos/lib/TIGR /data/apps/maker/lib /data/apps/metAMOS/KronaTools/lib /data/apps/SSPACE-BASIC-2.0_linux-x86_64/dotlib /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at (eval 7) line 3.
Perhaps the DBD::SQLite perl module hasn't been fully installed,
or perhaps the capitalisation of 'SQLite' isn't right.
Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge, mysql.
at /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/TrinotateSeqLoader.pl line 72
Error, cmd: /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/TrinotateSeqLoader.pl --gene_trans_map /home/new/trinity_targets.gene_trans_map --transcript_fasta /home/new/trinity_targets.fasta --transdecoder_pep /home/new1/trinity_targets.fasta.transdecoder.pep --bulk_load died with ret 512 at ./Trinotate line 109.
I understand that SQLite.pm perl library is missing. But I am not able to get the library.
Can you please me solve this issue.
Regards
Vishwesh
When I run the following command
$ Trinotate Trinotate.sqlite init --gene_trans_map /home/new/trinity_targets.gene_trans_map --transcript_fasta /home/new/trinity_targets.fasta --transdecoder_pep /home/new1/trinity_targets.fasta.transdecoder.pep
I get the error
CMD: /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/TrinotateSeqLoader.pl --gene_trans_map /home/new/trinity_targets.gene_trans_map --transcript_fasta /home/new/trinity_targets.fasta --transdecoder_pep /home/new1/trinity_targets.fasta.transdecoder.pep --bulk_load
install_driver(SQLite) failed: Can't locate DBD/SQLite.pm in @INC (@INC contains: /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/../../PerlLib /data/apps/amos/lib/AMOS /data/apps/amos/lib/TIGR /data/apps/maker/lib /data/apps/metAMOS/KronaTools/lib /data/apps/SSPACE-BASIC-2.0_linux-x86_64/dotlib /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at (eval 7) line 3.
Perhaps the DBD::SQLite perl module hasn't been fully installed,
or perhaps the capitalisation of 'SQLite' isn't right.
Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge, mysql.
at /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/TrinotateSeqLoader.pl line 72
Error, cmd: /gpfshome/Trinotate_r20131110/util/trinotateSeqLoader/TrinotateSeqLoader.pl --gene_trans_map /home/new/trinity_targets.gene_trans_map --transcript_fasta /home/new/trinity_targets.fasta --transdecoder_pep /home/new1/trinity_targets.fasta.transdecoder.pep --bulk_load died with ret 512 at ./Trinotate line 109.
I understand that SQLite.pm perl library is missing. But I am not able to get the library.
Can you please me solve this issue.
Regards
Vishwesh