In principle, you could follow the 'Tour' in the HTSeq documentation to learn how to do this yourself.
The htseq-count script falls into two parts: the main part doing the actual counting, and surrounding it a thin wrapper to get the intervals out of the SAM file. This is all that needs to be changed, and once I separate these into two modular parts, it will be even easier. Might take a while until I find the time to so, though.
S
The htseq-count script falls into two parts: the main part doing the actual counting, and surrounding it a thin wrapper to get the intervals out of the SAM file. This is all that needs to be changed, and once I separate these into two modular parts, it will be even easier. Might take a while until I find the time to so, though.
S
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