Hi, all,
I am a new drummy for bioinformatics.
After SNP calling using GATK/freebayes, we usually get a SNP list. Now I have some interest SNP sites. Does anyone know how to identify those reads containing these interest SNPs?
Please note these SNP might be heterozygous. And now I mapped the reads to a reference, and get sorted bam file.
Would anyone tell me how to achieve that in detail or just tell me your thought and some tools might be helpful
I am a new drummy for bioinformatics.
After SNP calling using GATK/freebayes, we usually get a SNP list. Now I have some interest SNP sites. Does anyone know how to identify those reads containing these interest SNPs?
Please note these SNP might be heterozygous. And now I mapped the reads to a reference, and get sorted bam file.
Would anyone tell me how to achieve that in detail or just tell me your thought and some tools might be helpful
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