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  • Antony03
    Member
    • Apr 2012
    • 53

    #1

    fasta35 VS fasta36

    Hello,

    I need to use, for a specific job, fasta35 and not fasta36. However, the result is clearly not the same between both.

    fasta35 gives only 1 alignment: http://pastebin.com/f4NdYJCt

    while fasta36 gives 3 alignments: http://pastebin.com/ADeKJ4GC

    What I'm doing wrong with fasta35? It is probably not normal that it misses almost 2 perfect alignments on 3.

    Thank you!
  • maubp
    Peter (Biopython etc)
    • Jul 2009
    • 1544

    #2
    This is a new feature in fasta36

    P.S. This question is a duplicate of a BioPerl mailing list thread where Chris gave a more detailed answer: http://lists.open-bio.org/pipermail/...st/088909.html
    Last edited by maubp; 08-08-2014, 12:07 AM. Reason: Added link

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