GeneMark: gene finding. How does it work?
Hi all
There is a package of soft for gene prediction in sequences. Quite nice and used in some papers.
Though, there is no good manual for the software on web-pages (or I can't find them).
My questions to those who are familiar are the following:
1. Is is possible to analyse fasta file with multiple entries? If yes, how?
Like special requirements for FASTA-format etc.
2. How can GeneMark take a seq of ~60 bases and "predict" me numerous (50) genes of ~200 bases?
3. Generally, is it trustworthy? Did you work with it enough to feel it was fine?
Sorry, questions are very general, but I am new to this soft, got a bit (well, a lot) puzzled today.
There is a package of soft for gene prediction in sequences. Quite nice and used in some papers.
Though, there is no good manual for the software on web-pages (or I can't find them).
My questions to those who are familiar are the following:
1. Is is possible to analyse fasta file with multiple entries? If yes, how?
Like special requirements for FASTA-format etc.2. How can GeneMark take a seq of ~60 bases and "predict" me numerous (50) genes of ~200 bases?
3. Generally, is it trustworthy? Did you work with it enough to feel it was fine?
Sorry, questions are very general, but I am new to this soft, got a bit (well, a lot) puzzled today.
