Hi
I have a list of SNPs and would like to recover all SNPs in strong LD with them (let's say 0.9) within a population (for example CEPH).
There is a web interface which does this (SNAP by broad) however this is quite old and only works with LD data from hapmap and 1000genomes pilot 1 data.
Are you aware of any other similar resource able to use more recent 1000g data?
Any suggestions are greatly appreciated.
I have a list of SNPs and would like to recover all SNPs in strong LD with them (let's say 0.9) within a population (for example CEPH).
There is a web interface which does this (SNAP by broad) however this is quite old and only works with LD data from hapmap and 1000genomes pilot 1 data.
Are you aware of any other similar resource able to use more recent 1000g data?
Any suggestions are greatly appreciated.
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