Hi:
We have created a tool to analyze NGS sequences and we think that it might be of some interest f
or some of the seqanswers members. We are using this tool in non model species to:
- clean sanger, 454 and illumina sequences,
- assemble transcriptomes (using mira),
- map reads to a reference genome,
- call SNPs and indels,
- filter SNPs and,
- annotate sequences (descriptions, GO terms, SSRs, etc.)
This software is written in python and released under the aGPL licence. Right now we consider it
beta software and although we're using it in several of our projects you can find some rough ed
ges when using the initial release. You can find more information at the ngs_backbone site.
If you try it out we would like to hear from you.
Best regards,
Jose Blanca
We have created a tool to analyze NGS sequences and we think that it might be of some interest f
or some of the seqanswers members. We are using this tool in non model species to:
- clean sanger, 454 and illumina sequences,
- assemble transcriptomes (using mira),
- map reads to a reference genome,
- call SNPs and indels,
- filter SNPs and,
- annotate sequences (descriptions, GO terms, SSRs, etc.)
This software is written in python and released under the aGPL licence. Right now we consider it
beta software and although we're using it in several of our projects you can find some rough ed
ges when using the initial release. You can find more information at the ngs_backbone site.
If you try it out we would like to hear from you.
Best regards,
Jose Blanca
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