Working on creating my .csv files for a large assembly in ALLPATHS and I recall someone telling me that ALLPATHS needs special attention when utilizing libraries with different phred scorings? How do I incorporate that into my input files?
Illumina 1.5 = phred 64?
Illumina 1.9 = phred 33?
Currently using a .ppt by Mike Schatz as a reference as this is my first use of ALLPATHS and it is a bit different than other assemblers I have used in the past.
Illumina 1.5 = phred 64?
Illumina 1.9 = phred 33?
Currently using a .ppt by Mike Schatz as a reference as this is my first use of ALLPATHS and it is a bit different than other assemblers I have used in the past.
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