Great tool! I would make a couple suggestions for future versions. Or if I'm missing these features in the current version, please let me know.
1. Do not use reads marked as PCR or optical duplicates when identifying variants.
2. Allow an intervals file to be used.
Both options would speed the program, and the first option would make the results more accurate.
Thanks!
1. Do not use reads marked as PCR or optical duplicates when identifying variants.
2. Allow an intervals file to be used.
Both options would speed the program, and the first option would make the results more accurate.
Thanks!
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