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Hello,
I am trying to interpret my k-mer graph which indicates that my organism might be tetraploid. However, I cannot find any good tetraploid NGS data to compare to. All plants are usually either multiple pooled individuals or at a very low coverage.
Ideally, I am looking for something sequenced at 70x and higher, and consisting of one individual sequenced, not pool-seq. Also, the organism would need to be an autotetraploid, not allotetraploid, as the former is what I am working with.
Let me know if you have seen such a dataset. Usually plant genome data, such as data for the potato genome is unusable because they are double monoploid strains.
I am trying to interpret my k-mer graph which indicates that my organism might be tetraploid. However, I cannot find any good tetraploid NGS data to compare to. All plants are usually either multiple pooled individuals or at a very low coverage.
Ideally, I am looking for something sequenced at 70x and higher, and consisting of one individual sequenced, not pool-seq. Also, the organism would need to be an autotetraploid, not allotetraploid, as the former is what I am working with.
Let me know if you have seen such a dataset. Usually plant genome data, such as data for the potato genome is unusable because they are double monoploid strains.