Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
Numbers that begin with 0 are transcripts that have been identified by Havana manual annotation, whereas numbers that begin with 2 have only been identified by Ensembl automatic annotation. There's more information on gene annotation here:
On top of this, numbers are assigned to transcripts when we identify them. Sometimes, a transcript will be identified, then later found to be false, so we will lose that transcript model. This means that we might start with transcripts 001, 002 and 003, but if 002 is found to be false, we'll just have 001 and 003. A new transcript that is identified will then be 004. We don't want to call it 002 and think it's the same as the false transcript.
-
Originally posted by Emily_Ensembl View PostNumbers that begin with 0 are transcripts that have been identified by Havana manual annotation, whereas numbers that begin with 2 have only been identified by Ensembl automatic annotation. There's more information on gene annotation here:
On top of this, numbers are assigned to transcripts when we identify them. Sometimes, a transcript will be identified, then later found to be false, so we will lose that transcript model. This means that we might start with transcripts 001, 002 and 003, but if 002 is found to be false, we'll just have 001 and 003. A new transcript that is identified will then be 004. We don't want to call it 002 and think it's the same as the false transcript.
That explained a lot. Thanks for your reply!
Comment
Latest Articles
Collapse
-
by seqadmin
The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...-
Channel: Articles
07-08-2024, 03:19 PM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Yesterday, 06:46 AM
|
0 responses
9 views
0 likes
|
Last Post
by seqadmin
Yesterday, 06:46 AM
|
||
Started by seqadmin, 07-24-2024, 11:09 AM
|
0 responses
25 views
0 likes
|
Last Post
by seqadmin
07-24-2024, 11:09 AM
|
||
Started by seqadmin, 07-19-2024, 07:20 AM
|
0 responses
159 views
0 likes
|
Last Post
by seqadmin
07-19-2024, 07:20 AM
|
||
Started by seqadmin, 07-16-2024, 05:49 AM
|
0 responses
127 views
0 likes
|
Last Post
by seqadmin
07-16-2024, 05:49 AM
|
Comment