Hi Community,
I am not entirely satisfied with what's available for whole-genome browsing of color space alignments.
I have tried IGV and had a look at the SOLiD alignment browser but I have run into some problems
I have a sorted BAM file from BFAST and I'm not sure how to change this to the Bioscope GFF3 format.
Has anybody had better luck in properly displaying colorspace alignments to a reference genome? I would like to see SNPs, sequencing errors, etc. in colorspace as compared to the reference sequence.
I am not entirely satisfied with what's available for whole-genome browsing of color space alignments.
I have tried IGV and had a look at the SOLiD alignment browser but I have run into some problems
I have a sorted BAM file from BFAST and I'm not sure how to change this to the Bioscope GFF3 format.
Has anybody had better luck in properly displaying colorspace alignments to a reference genome? I would like to see SNPs, sequencing errors, etc. in colorspace as compared to the reference sequence.
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