fastPhase multi allelic loci

etui

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Join Date: Mar 2012

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fastPhase multi allelic loci

10-29-2014, 06:08 AM

Hi all,

I try to use fastPhase for Linux (v 1.4.0) but I got the error message: 'problem with input: ind 4, locus 1 perhaps more than two allelic types encountered'.
I'm wondering if fastPhase can handle multi allelic loci? Should I split the data into populations? Or any suggestions how I can handle these data?

Best,
etui
-----------------------
The input file is:

Code:

9 19 # Strain1 3311344424131211443 3311344424131211443 # Strain2 2311344424131211443 2111344424131211443 # Strain3 2311144424131211441 2311144424131211441 # Strain4 4311144424131211441 4311144424131211441 # Strain5 2111344424131211441 4111344424131211441 # Strain6 2311344444131211441 2111344444131211441 # Strain7 2111344424131211441 2311344424131211441 # Strain8 2311144424131211441 2111144424131211441 # Strain9 2111344424131211441 2311344424131211441
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