Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    fastPhase multi allelic loci

    Hi all,

    I try to use fastPhase for Linux (v 1.4.0) but I got the error message: 'problem with input: ind 4, locus 1 perhaps more than two allelic types encountered'.
    I'm wondering if fastPhase can handle multi allelic loci? Should I split the data into populations? Or any suggestions how I can handle these data?

    Best,
    etui
    -----------------------
    The input file is:
    Code:
    9
19
# Strain1
3311344424131211443
3311344424131211443
# Strain2
2311344424131211443
2111344424131211443
# Strain3
2311144424131211441
2311144424131211441
# Strain4
4311144424131211441
4311144424131211441
# Strain5
2111344424131211441
4111344424131211441
# Strain6
2311344444131211441
2111344444131211441
# Strain7
2111344424131211441
2311344424131211441
# Strain8
2311144424131211441
2111144424131211441
# Strain9
2111344424131211441
2311344424131211441
    Tags: None
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Essential Discoveries and Tools in Epitranscriptomics
    by seqadmin




    The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
    04-22-2024, 07:01 AM
  • seqadmin
    Current Approaches to Protein Sequencing
    by seqadmin


    Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
    04-04-2024, 04:25 PM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
Expanding the Horizons of Cellular Research with the Single Cell Atlas by seqadmin
Started by seqadmin, 04-25-2024, 11:49 AM
0 responses
15 views
0 likes
 Last Post seqadmin
by seqadmin
04-25-2024, 11:49 AM  
Genetic Variants and Diabetes Risk in Childhood Cancer Survivors by seqadmin
Started by seqadmin, 04-24-2024, 08:47 AM
0 responses
16 views
0 likes
 Last Post seqadmin
by seqadmin
04-24-2024, 08:47 AM  
Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
Started by seqadmin, 04-11-2024, 12:08 PM
0 responses
62 views
0 likes
 Last Post seqadmin
by seqadmin
04-11-2024, 12:08 PM  
Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
Started by seqadmin, 04-10-2024, 10:19 PM
0 responses
60 views
0 likes
 Last Post seqadmin
by seqadmin
04-10-2024, 10:19 PM  
View All
Working...
X