human microbiome clinical and nonclinical tools?

[Zapages]

Hello Everyone,

I was wondering what tools would you guys recommend to do some human microbiome data analysis.

I have read Qiime, mothur, and VAMPs are recommended by the a review article called Experimental and analytical tools for studying the human microbiome

In addition to these, there is the CloVR: http://www.hmpdacc.org/tools_protoco..._protocols.php

and IGS, VIROME on DIAG: http://diagcomputing.org/about/projects.php

Unfortunately, Virome has currently has disabled uploading onto their website.

Regardless of these tools, I was thinking are there any other free or paid tools available to use/test for the analysis of human microbiome data?

Thank you in advance.

-Zapages