Hello,
I few weeks ago I received the results of my Exome sequencing project.
Can someone help me with the conversion to SAM/BAM format.
This is an example of the files i've got:
mapping_GS81299-FS3-L08_001.tsv
reads_GS81299-FS3-L08_001.tsv
build37.crr
How to convert with evidence2sam? Didn't work out for me.
I have a second question
in the VCF file qual = '.'
However, in another file they give a QUAL value for each allele. Does it make sense to make the total of these values and divide them by 2 to put the result in an standard VCF file?
Thank you in advance for answering. I'm new in this domain.
I few weeks ago I received the results of my Exome sequencing project.
Can someone help me with the conversion to SAM/BAM format.
This is an example of the files i've got:
mapping_GS81299-FS3-L08_001.tsv
reads_GS81299-FS3-L08_001.tsv
build37.crr
How to convert with evidence2sam? Didn't work out for me.
I have a second question
in the VCF file qual = '.'
However, in another file they give a QUAL value for each allele. Does it make sense to make the total of these values and divide them by 2 to put the result in an standard VCF file?
Thank you in advance for answering. I'm new in this domain.
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