Hi
I am trying to map illumina deepsequenced shortRNA transcripts to different types of RNA databases such as miRNA, piRNA, rRNA etc.
Is it a good idea to map the reads separately to each database or should I combine all the databases and create one index?
or should it really matter?
Thanks in advance.
I am trying to map illumina deepsequenced shortRNA transcripts to different types of RNA databases such as miRNA, piRNA, rRNA etc.
Is it a good idea to map the reads separately to each database or should I combine all the databases and create one index?
or should it really matter?
Thanks in advance.
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