Dear all,
We would like to extract the read depth of each base type (A, C, T or G) for every position of our aligned reads (a SAM file created using Bowtie2).
Does anyone know of a tool that does this?
The closest link I found here was:
But I'm not sure that would be appropriate for use with aligned genome data.
Many thanks
We would like to extract the read depth of each base type (A, C, T or G) for every position of our aligned reads (a SAM file created using Bowtie2).
Does anyone know of a tool that does this?
The closest link I found here was:
But I'm not sure that would be appropriate for use with aligned genome data.
Many thanks
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