MACS2 returns bedgraph files containing only unknowns - SEQanswers

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Skissors

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Join Date: Feb 2014

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MACS2 returns bedgraph files containing only unknowns

02-18-2015, 07:07 AM

I managed to use MACS2 to call peaks and generate a signal track in bedgraph format. When I check the bedgraph files, they only contained ChrUn and none of the called peaks. Any idea how I can generate a signal track containing my peaks?
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