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How about this. Can you provide some information on how you are trying to run the blast command line tool? Are you getting an error? If you can give any of us an idea of what you are doing and perhaps why it is not working for you then maybe someone can give you the answer you are looking for. If you do not feel that providing anything other than "please help me" I suggest you type "blast -help" in the command line and get to reading. -
Check out the section on custom output formats.
Detailed explanation of command line output format options for blast: https://www.biostars.org/p/88944/Leave a comment:
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i am running blastp in commandline.i didn't get query coverage results.how to got it?help me?Leave a comment:
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What you want in the outfmt option is qcovs, well at least its what I think you want.Leave a comment:
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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