Hello,
I have a question the option of bismark, concerning the bowtie 2 reporting options --most_valid_alignments.
If I'm not wrong the option -M is not available now in Bowtie2, so how can you ask to the program to keep only valid aligments only unique aligments?
I have a question the option of bismark, concerning the bowtie 2 reporting options --most_valid_alignments.
If I'm not wrong the option -M is not available now in Bowtie2, so how can you ask to the program to keep only valid aligments only unique aligments?
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