Hi all,
I downloaded FASTA files from NCBI and tried to use them in my sequencing pipeline. The issue is that within the FASTA file the sequences were represented using their genbank accession and due to this the genbank accession also appreared in the VCF file which is undesirable.
Is there a way to prepare a FASTA file so that chromosome number is used or rather is there a way to "prepare" a FASTA file for sequencing use?
Thank in advance.
I downloaded FASTA files from NCBI and tried to use them in my sequencing pipeline. The issue is that within the FASTA file the sequences were represented using their genbank accession and due to this the genbank accession also appreared in the VCF file which is undesirable.
Is there a way to prepare a FASTA file so that chromosome number is used or rather is there a way to "prepare" a FASTA file for sequencing use?
Thank in advance.
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