Originally posted by santiagorevale
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Exception in thread "main" java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.LinkedHashMap.newNode(LinkedHashMap.java:256) at java.util.HashMap.putVal(HashMap.java:641) at java.util.HashMap.put(HashMap.java:611) at java.util.HashSet.add(HashSet.java:219) at shared.Tools.addNames(Tools.java:456) at driver.FilterReadsByName.<init>(FilterReadsByName.java:138) at driver.FilterReadsByName.main(FilterReadsByName.java:40)
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space at java.lang.StringCoding.decode(StringCoding.java:187) at java.lang.StringCoding.decode(StringCoding.java:254) at java.lang.String.<init>(String.java:546) at java.lang.String.<init>(String.java:566) at shared.Tools.addNames(Tools.java:456) at driver.FilterReadsByName.<init>(FilterReadsByName.java:138) at driver.FilterReadsByName.main(FilterReadsByName.java:40)
java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.Arrays.copyOfRange(Arrays.java:3520) at stream.KillSwitch.copyOfRange(KillSwitch.java:300) at fileIO.ByteFile1.nextLine(ByteFile1.java:164) at shared.Tools.addNames(Tools.java:454) at driver.FilterReadsByName.<init>(FilterReadsByName.java:138) at driver.FilterReadsByName.main(FilterReadsByName.java:40) This program ran out of memory. Try increasing the -Xmx flag and using tool-specific memory-related parameters.
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