I'm running a MiSeq V3 300PE with 96-182 multiplexing for 16S microbiome studies.
I'm currently using CloVR for my 16S analysis (as well as PEAR for read merging and FASTX-toolkit for trim etc.)
I've noticed that some of the tools and databases within CloVR are out of date (uchime, greengenes, chimera database). Is it possible to update them manually or is it suggested to move away from CloVR and use QIIME/mothur/uparse manually rather than a package?
Thanks for your suggestions,
I'm currently using CloVR for my 16S analysis (as well as PEAR for read merging and FASTX-toolkit for trim etc.)
I've noticed that some of the tools and databases within CloVR are out of date (uchime, greengenes, chimera database). Is it possible to update them manually or is it suggested to move away from CloVR and use QIIME/mothur/uparse manually rather than a package?
Thanks for your suggestions,
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