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Hi,
Could I please get some advice on the following issue? I have used trim_galore using the rrbs option and without rrbs option to identify the artifically inserted cytosine to calculate bisulfite conversion efficiency.
The output file which have not been trimmed using the rrbs option opens well with python as a text file. However, I get the following error when I try to open the output file that has been trimmed with the rrbs option as a text file using python:
(unicode error)'unicodeescape' codec can't decode bytes in position 23-24: truncated \UXXXXXXXX escape
I thought this might be specific to this sample, so I tried different samples and all that has been trimmed with the rrbs option seem to have the same problem. I don't think the file is corrupted as they seem t align well with bismark.
Could someone please point me the right direction on this issue?
Thanks
Could I please get some advice on the following issue? I have used trim_galore using the rrbs option and without rrbs option to identify the artifically inserted cytosine to calculate bisulfite conversion efficiency.
The output file which have not been trimmed using the rrbs option opens well with python as a text file. However, I get the following error when I try to open the output file that has been trimmed with the rrbs option as a text file using python:
(unicode error)'unicodeescape' codec can't decode bytes in position 23-24: truncated \UXXXXXXXX escape
I thought this might be specific to this sample, so I tried different samples and all that has been trimmed with the rrbs option seem to have the same problem. I don't think the file is corrupted as they seem t align well with bismark.
Could someone please point me the right direction on this issue?
Thanks