I had trouble installing bedtools on windows using cygwin (or at least I did a year ago). I am reading about pybedtools and just want to make sure I understand it:
Using BedTools 2.20
Using pybedtools:
Using BedTools 2.20:
Using pybedtools:
Thank you
Using BedTools 2.20
Code:
mergeBed - i example.bed > merged_example.bed
Code:
pybedtools.merge('example.bed') > merged_example.bed
Code:
intersectBed -a merged_example.bed -b IDT.bed > intersected_example.bed
Code:
pybedtools.intersect(intersectBed -a merged_example.bed -b IDT.bed) > intersected_example.bed