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Detect cleavage sites in bacterial RNAseq data

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  • Detect cleavage sites in bacterial RNAseq data

    Dear Folks -
    Do you have experience / expertise with - any bioinformatics protocols for detecting the cleavage sites in RNA using whole transcriptome (RNAseq) data of bacteria? The total RNA of bacteria has been treated with Ribo-Zero rRNA kit before sequencing on Illumina HiSeq platform. Looking forward a right methodology for identifying genes that are cleaved at specific sites in case samples. Please suggest your views
    Thanks
    Raj
    Last edited by pravee1216; 06-02-2015, 03:36 AM.
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