CloudBrush: java.lang.IllegalArgumentException: Comparison method violates

[hemgupt1]

Hiii

I have already spent two days to short out this error, even I tried workaround which are suggested in several stackoverflow posts "-Djava.util.Arrays.useLegacyMergeSort=true" but it also doesnt work.

this is the details of my command and its returning error:

Command:

hadoop jar CloudBrush.jar -Djava.awt.headless=true -Djava.util.Arrays.useLegacyMergeSort=true -reads /Ec10k -asm Ec10k_Brush -k 21 -readlen 36

Error:

Error: java.lang.IllegalArgumentException: Comparison method violates its general contract!
    at java.util.TimSort.mergeHi(TimSort.java:895)
    at java.util.TimSort.mergeAt(TimSort.java:512)
    at java.util.TimSort.mergeCollapse(TimSort.java:437)
    at java.util.TimSort.sort(TimSort.java:241)
    at java.util.Arrays.sort(Arrays.java:1512)
    at java.util.ArrayList.sort(ArrayList.java:1454)
    at java.util.Collections.sort(Collections.java:175)
    at Brush.VerifyOverlap$VerifyOverlapReducer.reduce(VerifyOverlap.java:252)
    at Brush.VerifyOverlap$VerifyOverlapReducer.reduce(VerifyOverlap.java:1)
    at org.apache.hadoop.mapred.ReduceTask.runOldReducer(ReduceTask.java:444)
    at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:392)
    at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:163)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:422)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
    at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:158)

Exception in thread "main" java.io.IOException: Job failed!
    at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:836)
    at Brush.VerifyOverlap.run(VerifyOverlap.java:381)
    at Brush.BrushAssembler.buildOverlap(BrushAssembler.java:326)
    at Brush.BrushAssembler.run(BrushAssembler.java:838)
    at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
    at Brush.BrushAssembler.main(BrushAssembler.java:913)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
    at org.apache.hadoop.util.RunJar.main(RunJar.java:136)