I read some literatures about call sv with samtools and noticed a filter to remove the candidate sv based on the reads mapping to each strand. for example, this paper http://www.ncbi.nlm.nih.gov/pubmed/25673793. I'd not know how to set up this filter within samtools. Please help me out. Besides, I think the Mycobacterium is haploid. Is it right to call the sv using samtools? Maybe they should use gatk or freebayes with haploid model.
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...Today, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
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