Hi Brian,
I'm getting an error while trying to use tadpole. Tadpole.sh brings up the expected list of options, so I know that I've directed the terminal correctly.
However, adding the in=<readsfile.fastq> out=<output directory> doesn't work - I get the following error:
java -ea -Xmx15000m -Xms15000m -cp /Users/DJV/programs/bbmap/current/ assemble.Tadpole in=/Users/DJV/Desktop/IN/150-P6-C9 assembled to HXB2 Nested Amplified Region.fastq out=/Users/DJV/Desktop/Out
Executing assemble.Tadpole1 [in=/Users/DJV/Desktop/IN/150-P6-C9, assembled, to, HXB2, Nested, Amplified, Region.fastq, out=/Users/DJV/Desktop/Out]
Exception in thread "main" java.lang.RuntimeException: Unknown parameter assembled
at assemble.Tadpole.<init>(Tadpole.java:447)
at assemble.Tadpole1.<init>(Tadpole1.java:66)
at assemble.Tadpole.makeTadpole(Tadpole.java:77)
at assemble.Tadpole.main(Tadpole.java:64)
Here's my Java version information:
java version "1.8.0_111"
Java(TM) SE Runtime Environment (build 1.8.0_111-b14)
Java HotSpot(TM) 64-Bit Server VM (build 25.111-b14, mixed mode)
Any idea why I'm getting these errors?
Thanks
Jake
I'm getting an error while trying to use tadpole. Tadpole.sh brings up the expected list of options, so I know that I've directed the terminal correctly.
However, adding the in=<readsfile.fastq> out=<output directory> doesn't work - I get the following error:
java -ea -Xmx15000m -Xms15000m -cp /Users/DJV/programs/bbmap/current/ assemble.Tadpole in=/Users/DJV/Desktop/IN/150-P6-C9 assembled to HXB2 Nested Amplified Region.fastq out=/Users/DJV/Desktop/Out
Executing assemble.Tadpole1 [in=/Users/DJV/Desktop/IN/150-P6-C9, assembled, to, HXB2, Nested, Amplified, Region.fastq, out=/Users/DJV/Desktop/Out]
Exception in thread "main" java.lang.RuntimeException: Unknown parameter assembled
at assemble.Tadpole.<init>(Tadpole.java:447)
at assemble.Tadpole1.<init>(Tadpole1.java:66)
at assemble.Tadpole.makeTadpole(Tadpole.java:77)
at assemble.Tadpole.main(Tadpole.java:64)
Here's my Java version information:
java version "1.8.0_111"
Java(TM) SE Runtime Environment (build 1.8.0_111-b14)
Java HotSpot(TM) 64-Bit Server VM (build 25.111-b14, mixed mode)
Any idea why I'm getting these errors?
Thanks
Jake
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