Header Leaderboard Ad

Collapse

bcftools inastallation problem

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • GenoMax
    replied
    Code:
    $ sudo apt-get install zlib zlib-devel

    Leave a comment:


  • zillur
    started a topic bcftools inastallation problem

    bcftools inastallation problem

    Hi there,
    I wanted to try to install bcftools in my linux workstation. But it gave me the following error report. What should I do now?

    Best Regards
    Zillur

    [[email protected] ~]$ cd Desktop/zillur/Tools/bcftools-1.2/
    [[email protected] bcftools-1.2]$ ls
    AUTHORS Makefile consensus.c filter.c kmin.c ploidy.h prob1.h tsv2vcf.c vcfconcat.c vcfisec.c vcfroh.c vcmp.c
    HMM.c README convert.c filter.h kmin.h plot-vcfstats rbuf.h tsv2vcf.h vcfconvert.c vcfmerge.c vcfsom.c vcmp.h
    HMM.h bcftools.h convert.h gvcf.c main.c plugins reheader.c vcfannotate.c vcffilter.c vcfnorm.c vcfstats.c version.c
    INSTALL call.h doc htslib-1.2.1 mcall.c polysomy.c tabix.c vcfcall.c vcfgtcheck.c vcfplugin.c vcfutils.pl
    LICENSE ccall.c em.c khash_str2str.h ploidy.c prob1.c test vcfcnv.c vcfindex.c vcfquery.c vcfview.c
    [[email protected] bcftools-1.2]$ nano README
    [[email protected] bcftools-1.2]$ nano INSTALL
    [[email protected] bcftools-1.2]$ sudo make
    [sudo] password for zillur:
    cd htslib-1.2.1 && make lib-static
    make[1]: Entering directory `/home/zillur/Desktop/zillur/Tools/bcftools-1.2/htslib-1.2.1'
    gcc -g -Wall -O2 -I. -c -o bgzf.o bgzf.c
    In file included from bgzf.c:37:0:
    htslib/bgzf.h:34:18: fatal error: zlib.h: No such file or directory
    #include <zlib.h>
    ^
    compilation terminated.
    make[1]: *** [bgzf.o] Error 1
    make[1]: Leaving directory `/home/zillur/Desktop/zillur/Tools/bcftools-1.2/htslib-1.2.1'
    make: *** [htslib-1.2.1/libhts.a] Error 2
    [[email protected] bcftools-1.2]$
Working...
X