Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • aleferna
    Senior Member
    • Sep 2009
    • 121
    #1

    maq2sam-long eats first letter

    Hi, I'm running maq2sam-long and it seems to be eating the first N letters of my reads which is a big pain as I'm trying to compare mapping quality between different algorithms to map a solexa run. Any ideas or patches available?

    All read id's should start with MID10

    ID10_6:1:11989:5823:TGACCA_1_M76-97 16 chr10...
    D10_6:1:11988:14238:TGACCA_1_M72-97 16 chr1...
    ID10_6:1:11980:7951:TGACCA_1_M76-97 16 chr6...
    ID11_6:1:1198:12269:ACAGTG_1_M24-43 0 chr18...
    6:1:1198:12269:ACAGTG_2_M0-42_M0-18 16 chr7...
    ID12_6:1:11989:4489:GCCAAT_2_M80-97 0 chr2...
    MID12_6:1:11982:3900:GCCAAT_2 16 chr13...
    MID13_6:1:11982:9036:CAGATC_1 0 chr10...
    Tags: None
  • aleferna
    Senior Member
    • Sep 2009
    • 121
    #2
    sorry should start with MID10, MID11, MID12, etc, etc, etc

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • SEQadmin2
      Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems
      by SEQadmin2



      Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
      ...
      Yesterday, 11:10 AM
    • SEQadmin2
      Cancer Drug Resistance: The Lingering Barrier to Rising Survival
      by SEQadmin2



      Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.

      There is no single reason why many patients don’t respond to treatment as expected. Cancer is...
      07-08-2026, 05:17 AM
    • GATTACAT
      Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
      by GATTACAT
      Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
      07-01-2026, 11:43 AM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    New Analysis Splits Leukemia Into 16 Epigenomic Subgroups by SEQadmin2
    Started by SEQadmin2, Yesterday, 10:04 AM
    0 responses
    10 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    Yesterday, 10:04 AM  
    Genome-Wide CRISPR Screen Uncovers Unlikely Psoriasis Target by SEQadmin2
    Started by SEQadmin2, 07-08-2026, 10:08 AM
    0 responses
    7 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    07-08-2026, 10:08 AM  
    Engineered Protein Motor Takes Its First Steps Along DNA Track by SEQadmin2
    Started by SEQadmin2, 07-07-2026, 11:05 AM
    0 responses
    14 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    07-07-2026, 11:05 AM  
    High-Resolution Sequencing Exposes Hidden Toxoplasma Diversity by SEQadmin2
    Started by SEQadmin2, 07-02-2026, 11:08 AM
    0 responses
    31 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    07-02-2026, 11:08 AM  
    View All
    Working...