I am installing vcftools from github and have two questions:
1. where do I put the samtools1.2 folder so that the tabix and bgzip index can be used.
I added it to path but am not sure where i should put the download.
2. I am following the install guide as posted on github and not able to do the ./configure or make.
Thank you .
EDIT:
I was able to do the ./configure and make but get an error doing the make install
1. where do I put the samtools1.2 folder so that the tabix and bgzip index can be used.
I added it to path but am not sure where i should put the download.
2. I am following the install guide as posted on github and not able to do the ./configure or make.
Code:
bash: ./configure: No such file or directory
Code:
make: *** No targets specified and no makefile found. Stop.
EDIT:
I was able to do the ./configure and make but get an error doing the make install
Code:
Making install in src make[1]: Entering directory `/home/cmccabe/Desktop/ngs_analysis/vcftools-0.1.14/src' Making install in cpp make[2]: Entering directory `/home/cmccabe/Desktop/ngs_analysis/vcftools-0.1.14/src/cpp' make[3]: Entering directory `/home/cmccabe/Desktop/ngs_analysis/vcftools-0.1.14/src/cpp' /bin/mkdir -p '/usr/local/bin' [B]/usr/bin/install -c vcftools '/usr/local/bin' /usr/bin/install: cannot create regular file ‘/usr/local/bin/vcftools’: Permission denied[/B] make[3]: *** [install-binPROGRAMS] Error 1 make[3]: Leaving directory `/home/cmccabe/Desktop/ngs_analysis/vcftools-0.1.14/src/cpp' make[2]: *** [install-am] Error 2 make[2]: Leaving directory `/home/cmccabe/Desktop/ngs_analysis/vcftools-0.1.14/src/cpp' make[1]: *** [install-recursive] Error 1 make[1]: Leaving directory `/home/cmccabe/Desktop/ngs_analysis/vcftools-0.1.14/src' make: *** [install-recursive] Error 1
Comment