Hi everyone,
I have single end ATAC-seq data and I want to generate a histogram of the fragment size similar to the one you see in the first figure of most chromatin accessibility papers. I know CollectInsertSizeMetrics from Picard will do this for paired end data, but will it also work for single end data? When I tried running it, it didn't seem to work, but I'm new to bioinformatics so this could be a user error. Many thanks for any help on this you can offer.
I have single end ATAC-seq data and I want to generate a histogram of the fragment size similar to the one you see in the first figure of most chromatin accessibility papers. I know CollectInsertSizeMetrics from Picard will do this for paired end data, but will it also work for single end data? When I tried running it, it didn't seem to work, but I'm new to bioinformatics so this could be a user error. Many thanks for any help on this you can offer.
Comment