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  • Short intro to Unix utilities for NGS

    Hello everyone,

    one of our bioinformaticians posted a blog entry describing a few tricks he uses (from the classic Unix toolbox) in the context of NGS data analyses. As a longtime and avid user of Unix myself, I was surprised to learn a few things!

    As a reference, the entry is here: http://bioinfo.iric.ca/working-with-large-files/.

    Are there any extensive tutorials (or online courses) designed to teach Unix skills to bioinformaticians involved with NGS? I'd love to have a list of recommendations I could use with new students / interns.

    Best,

    Sébastien

  • #2
    Keith Bradnam and Ian Korf's "Intro to Unix and Perl" online course is one of the best resources for new users: http://korflab.ucdavis.edu/Unix_and_...ent.html#part1

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    • #3
      Mooc

      You can also look at the ongoing mooc "Command line tools for Genomic Data Science" on coursera

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      • #4
        Originally posted by GenoMax View Post
        Keith Bradnam and Ian Korf's "Intro to Unix and Perl" online course is one of the best resources for new users: http://korflab.ucdavis.edu/Unix_and_...ent.html#part1
        Thanks a lot, this is exactly in the spirit of what I was looking for!

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