ssahasnp

fanshu

Junior Member

Join Date: Jul 2010

Posts: 4
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ssahasnp

07-25-2010, 09:12 PM

I want to known how to use ssahasnp
Can you help me ?
My data :Illumina GA ,single-end reads
purpose:detect indel
Thank you very much

now, I have detected indels by ssahasnp, but there is a new problem,
how to parse the indels, the parse_indel runs unnormally.
Its output is "ERROR main:: reads group file" . I don't known the reason.
If you used it once, please tell me why.
Thanks.

Last edited by fanshu; 08-04-2010, 09:04 PM. Reason: new problem

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