Hi all,
I have obsereved that a couple of alignment records as generated by TopHat has empty QUAL field (11th column) in SAM file.
This results the following error while converting this SAM file to BAM using samtools 1.0 (view):
[W::sam_read] parse error at line 83974818
[main_samview] truncated file.
It would be great if you let me know what could be the reason for the empty QUAL field.
Thanks,
Srikant
I have obsereved that a couple of alignment records as generated by TopHat has empty QUAL field (11th column) in SAM file.
This results the following error while converting this SAM file to BAM using samtools 1.0 (view):
[W::sam_read] parse error at line 83974818
[main_samview] truncated file.
It would be great if you let me know what could be the reason for the empty QUAL field.
Thanks,
Srikant
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