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  • TCGA level 3 SNP array names meaning

    Hi all,
    Do you know what is the meaning of the names?
    For example:
    TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_D09_1513182.hg19.seg.txt
    TAKEN_p_TCGAb_379_400_FFPE_NSP_GenomeWideSNP_6_F11_1513230.hg19.seg.txt
    URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.hg19.seg.txt
    URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.hg19.seg.txt

    I have here 4 files.
    the 2 first seems to have somthing in common, and the the 2 others also.
    Both from the TCGA level 3 for BRCA.
    Moreover, they are mapped to different barcodes, so i guess its not the same patients.

    Any light?

    Thanks,
    Pap

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