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  • #1

    how to remove duplicated gene pairs

    Dear all,

    I want to remove duplicated gene pairs (which was generated from all by all blastp) from

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN129833_c0_g1_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN140628_c4_g2_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN135041_c0_g1_i1

    TRINITY_DN135041_c0_g1_i1 TRINITY_DN106621_c0_g1_i1

    TRINITY_DN140628_c4_g2_i2 TRINITY_DN106621_c0_g1_i1

    TRINITY_DN129833_c0_g1_i2 TRINITY_DN106621_c0_g1_i1

    to

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN129833_c0_g1_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN140628_c4_g2_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN135041_c0_g1_i1



    Can I make it just using the linux code or perl code?

    Any advice would be great.

    Thank you very much.
    Tags: gene duplication
  • #2
    cross posted (and solved): https://www.biostars.org/p/178425/
    Last edited by GenoMax; 02-24-2016, 04:40 AM.

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