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  • liuhui
    Junior Member
    • Feb 2016
    • 3
    #1

    how to remove duplicated gene pairs

    Dear all,

    I want to remove duplicated gene pairs (which was generated from all by all blastp) from

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN129833_c0_g1_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN140628_c4_g2_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN135041_c0_g1_i1

    TRINITY_DN135041_c0_g1_i1 TRINITY_DN106621_c0_g1_i1

    TRINITY_DN140628_c4_g2_i2 TRINITY_DN106621_c0_g1_i1

    TRINITY_DN129833_c0_g1_i2 TRINITY_DN106621_c0_g1_i1

    to

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN129833_c0_g1_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN140628_c4_g2_i2

    TRINITY_DN106621_c0_g1_i1 TRINITY_DN135041_c0_g1_i1



    Can I make it just using the linux code or perl code?

    Any advice would be great.

    Thank you very much.
    Tags: gene duplication
    • lindenb
      Senior Member
      • Apr 2010
      • 143
      #2
      cross posted (and solved): https://www.biostars.org/p/178425/
      Last edited by GenoMax; 02-24-2016, 04:40 AM.

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