Hi,
I am trying to run ShortStack-3.3 with the following input..
$ perl ShortStack.pl [options] {--readfile {ats_1000.fa}} --genomefile sta.fa
But it returns me the following
Unknown arguments: [options] {--readfile {ats_1000.fa}}
ShortStack version 3.3
Usage: ShortStack [options] {--readfile <r> | {--bamfile <b> | --cramfile <c>}} --genomefile <g>
I'm still very new to perl. Could anyone tell me what seems to be the problem?
I am trying to run ShortStack-3.3 with the following input..
$ perl ShortStack.pl [options] {--readfile {ats_1000.fa}} --genomefile sta.fa
But it returns me the following
Unknown arguments: [options] {--readfile {ats_1000.fa}}
ShortStack version 3.3
Usage: ShortStack [options] {--readfile <r> | {--bamfile <b> | --cramfile <c>}} --genomefile <g>
I'm still very new to perl. Could anyone tell me what seems to be the problem?
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