Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    How to convert pfam output format?

    Dear all,
    Recently, I aligned my transcriptome sequences to the pfam database. Sometimes, one sequence will hit several pfam records. And I want to convert the pfam output format from

    TRINITY_GG_428_c0_g1_i1_orf1 PF13499.1 EF_hand_5
    TRINITY_GG_428_c0_g1_i1_orf1 PF00036.27 efhand
    TRINITY_GG_428_c0_g1_i1_orf1 PF13405.1 EF_hand_4
    TRINITY_GG_428_c0_g1_i1_orf1 PF13833.1 EF_hand_6
    TRINITY_GG_428_c0_g1_i1_orf1 PF13202.1 EF_hand_3
    TRINITY_GG_429_c0_g1_i1_orf1 PF00156.22 Pribosyltran
    TRINITY_GG_431_c5_g1_i1_orf1 PF00475.13 IGPD
    TRINITY_GG_461_c0_g1_i1_orf1 PF01208.12 URO-D
    TRINITY_GG_461_c0_g1_i1_orf1 PF12876.2 Cellulase-like

    to

    TRINITY_GG_428_c0_g1_i1_orf1 PF13499.1 EF_hand_5 | PF00036.27 efhand | PF13405.1 EF_hand_4 | PF13833.1 EF_hand_6 | PF13202.1 EF_hand_3
    TRINITY_GG_429_c0_g1_i1_orf1 PF00156.22 Pribosyltran
    TRINITY_GG_431_c5_g1_i1_orf1 PF00475.13 IGPD
    TRINITY_GG_461_c0_g1_i1_orf1 PF01208.12 URO-D | PF12876.2 Cellulase-like
    .
    Could you please share your code or any idea with me to solve this problem?
    Thank you very much!
    Tags: bioinfomatics, pfam
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    Yesterday, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
New Method for DNA Sequence Amplification by seqadmin
Started by seqadmin, Yesterday, 08:18 AM
0 responses
11 views
0 likes
 Last Post seqadmin
by seqadmin
Yesterday, 08:18 AM  
New Tools Enhance Single-Molecule DNA Analysis with Minimal Samples by seqadmin
Started by seqadmin, Yesterday, 08:04 AM
0 responses
12 views
0 likes
 Last Post seqadmin
by seqadmin
Yesterday, 08:04 AM  
SIX2 Protein Identified as a Key Player in Prostate Cancer Treatment Resistance by seqadmin
Started by seqadmin, 06-03-2024, 06:55 AM
0 responses
13 views
0 likes
 Last Post seqadmin
by seqadmin
06-03-2024, 06:55 AM  
Genetic Mosaicism More Prevalent Than Previously Thought by seqadmin
Started by seqadmin, 05-30-2024, 03:16 PM
0 responses
27 views
0 likes
 Last Post seqadmin
by seqadmin
05-30-2024, 03:16 PM  
View All
Working...
X